Ex Vivo:Article Title: Interferon-driven brain phenotype in a mouse model of RNaseT2 deficient leukoencephalopathy
Article Snippet: GraphPad Prism version 8.3.0 (GraphPad Software Inc, San Diego, CA); Ex vivo MRI: image sequence analysis (ISA) tool package (Paravision 5, Bruker) and OriginPro v. 8 (OriginLab); FACS: FlowJoTM Software Version 10.6.1 (Becton, Dickinson and Company, 2019); qPCR: QuantStudioTM Design & Analysis Software v1.4.3; In vivo MRI: Amira 6.2.0 (Thermo Fisher Scientific) for semiautomatic segmentation; Single nuclei RNA sequencing: CellRanger software v.4.0.0 (10XGenomics), SCANPY package v1.7.2 and ShinyGOVo.60; DAB-ISG15 signal analysis: Scikit-image v0.18.1 inlcuding automatic normalization (for details see public discussion on scikit-image developer page: https://github.com/scikit-image/scikit-image/pull/4725); Survival curves: open source python package lifelines (v0.26.0).
Magnetic Resonance Imaging:Article Title: Interferon-driven brain phenotype in a mouse model of RNaseT2 deficient leukoencephalopathy
Article Snippet: GraphPad Prism version 8.3.0 (GraphPad Software Inc, San Diego, CA); Ex vivo MRI: image sequence analysis (ISA) tool package (Paravision 5, Bruker) and OriginPro v. 8 (OriginLab); FACS: FlowJoTM Software Version 10.6.1 (Becton, Dickinson and Company, 2019); qPCR: QuantStudioTM Design & Analysis Software v1.4.3; In vivo MRI: Amira 6.2.0 (Thermo Fisher Scientific) for semiautomatic segmentation; Single nuclei RNA sequencing: CellRanger software v.4.0.0 (10XGenomics), SCANPY package v1.7.2 and ShinyGOVo.60; DAB-ISG15 signal analysis: Scikit-image v0.18.1 inlcuding automatic normalization (for details see public discussion on scikit-image developer page: https://github.com/scikit-image/scikit-image/pull/4725); Survival curves: open source python package lifelines (v0.26.0).
Sequencing:Article Title: Interferon-driven brain phenotype in a mouse model of RNaseT2 deficient leukoencephalopathy
Article Snippet: GraphPad Prism version 8.3.0 (GraphPad Software Inc, San Diego, CA); Ex vivo MRI: image sequence analysis (ISA) tool package (Paravision 5, Bruker) and OriginPro v. 8 (OriginLab); FACS: FlowJoTM Software Version 10.6.1 (Becton, Dickinson and Company, 2019); qPCR: QuantStudioTM Design & Analysis Software v1.4.3; In vivo MRI: Amira 6.2.0 (Thermo Fisher Scientific) for semiautomatic segmentation; Single nuclei RNA sequencing: CellRanger software v.4.0.0 (10XGenomics), SCANPY package v1.7.2 and ShinyGOVo.60; DAB-ISG15 signal analysis: Scikit-image v0.18.1 inlcuding automatic normalization (for details see public discussion on scikit-image developer page: https://github.com/scikit-image/scikit-image/pull/4725); Survival curves: open source python package lifelines (v0.26.0).
FACS:Article Title: Interferon-driven brain phenotype in a mouse model of RNaseT2 deficient leukoencephalopathy
Article Snippet: GraphPad Prism version 8.3.0 (GraphPad Software Inc, San Diego, CA); Ex vivo MRI: image sequence analysis (ISA) tool package (Paravision 5, Bruker) and OriginPro v. 8 (OriginLab); FACS: FlowJoTM Software Version 10.6.1 (Becton, Dickinson and Company, 2019); qPCR: QuantStudioTM Design & Analysis Software v1.4.3; In vivo MRI: Amira 6.2.0 (Thermo Fisher Scientific) for semiautomatic segmentation; Single nuclei RNA sequencing: CellRanger software v.4.0.0 (10XGenomics), SCANPY package v1.7.2 and ShinyGOVo.60; DAB-ISG15 signal analysis: Scikit-image v0.18.1 inlcuding automatic normalization (for details see public discussion on scikit-image developer page: https://github.com/scikit-image/scikit-image/pull/4725); Survival curves: open source python package lifelines (v0.26.0).
Software:Article Title: Interferon-driven brain phenotype in a mouse model of RNaseT2 deficient leukoencephalopathy
Article Snippet: GraphPad Prism version 8.3.0 (GraphPad Software Inc, San Diego, CA); Ex vivo MRI: image sequence analysis (ISA) tool package (Paravision 5, Bruker) and OriginPro v. 8 (OriginLab); FACS: FlowJoTM Software Version 10.6.1 (Becton, Dickinson and Company, 2019); qPCR: QuantStudioTM Design & Analysis Software v1.4.3; In vivo MRI: Amira 6.2.0 (Thermo Fisher Scientific) for semiautomatic segmentation; Single nuclei RNA sequencing: CellRanger software v.4.0.0 (10XGenomics), SCANPY package v1.7.2 and ShinyGOVo.60; DAB-ISG15 signal analysis: Scikit-image v0.18.1 inlcuding automatic normalization (for details see public discussion on scikit-image developer page: https://github.com/scikit-image/scikit-image/pull/4725); Survival curves: open source python package lifelines (v0.26.0).
Real-time Polymerase Chain Reaction:Article Title: Interferon-driven brain phenotype in a mouse model of RNaseT2 deficient leukoencephalopathy
Article Snippet: GraphPad Prism version 8.3.0 (GraphPad Software Inc, San Diego, CA); Ex vivo MRI: image sequence analysis (ISA) tool package (Paravision 5, Bruker) and OriginPro v. 8 (OriginLab); FACS: FlowJoTM Software Version 10.6.1 (Becton, Dickinson and Company, 2019); qPCR: QuantStudioTM Design & Analysis Software v1.4.3; In vivo MRI: Amira 6.2.0 (Thermo Fisher Scientific) for semiautomatic segmentation; Single nuclei RNA sequencing: CellRanger software v.4.0.0 (10XGenomics), SCANPY package v1.7.2 and ShinyGOVo.60; DAB-ISG15 signal analysis: Scikit-image v0.18.1 inlcuding automatic normalization (for details see public discussion on scikit-image developer page: https://github.com/scikit-image/scikit-image/pull/4725); Survival curves: open source python package lifelines (v0.26.0).
In Vivo:Article Title: Interferon-driven brain phenotype in a mouse model of RNaseT2 deficient leukoencephalopathy
Article Snippet: GraphPad Prism version 8.3.0 (GraphPad Software Inc, San Diego, CA); Ex vivo MRI: image sequence analysis (ISA) tool package (Paravision 5, Bruker) and OriginPro v. 8 (OriginLab); FACS: FlowJoTM Software Version 10.6.1 (Becton, Dickinson and Company, 2019); qPCR: QuantStudioTM Design & Analysis Software v1.4.3; In vivo MRI: Amira 6.2.0 (Thermo Fisher Scientific) for semiautomatic segmentation; Single nuclei RNA sequencing: CellRanger software v.4.0.0 (10XGenomics), SCANPY package v1.7.2 and ShinyGOVo.60; DAB-ISG15 signal analysis: Scikit-image v0.18.1 inlcuding automatic normalization (for details see public discussion on scikit-image developer page: https://github.com/scikit-image/scikit-image/pull/4725); Survival curves: open source python package lifelines (v0.26.0).
RNA Sequencing:Article Title: Interferon-driven brain phenotype in a mouse model of RNaseT2 deficient leukoencephalopathy
Article Snippet: GraphPad Prism version 8.3.0 (GraphPad Software Inc, San Diego, CA); Ex vivo MRI: image sequence analysis (ISA) tool package (Paravision 5, Bruker) and OriginPro v. 8 (OriginLab); FACS: FlowJoTM Software Version 10.6.1 (Becton, Dickinson and Company, 2019); qPCR: QuantStudioTM Design & Analysis Software v1.4.3; In vivo MRI: Amira 6.2.0 (Thermo Fisher Scientific) for semiautomatic segmentation; Single nuclei RNA sequencing: CellRanger software v.4.0.0 (10XGenomics), SCANPY package v1.7.2 and ShinyGOVo.60; DAB-ISG15 signal analysis: Scikit-image v0.18.1 inlcuding automatic normalization (for details see public discussion on scikit-image developer page: https://github.com/scikit-image/scikit-image/pull/4725); Survival curves: open source python package lifelines (v0.26.0).
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